5′-O-DMT-Thymidine

SKU:BHB21200091
Suppliers
Coenza
Coenza
Details Products
Overview
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5'-O-DMT-Thymidine is a synthetic nucleoside analog (C31H32N2O7; MW 544.60 g/mol) supplied as Crystalline powder, purity ≥ 98.0%. Suitable for oligonucleotide synthesis and nucleic acid chemistry applications requiring modified nucleoside building blocks.
Purity ≥ 98.0%
Form Crystalline powder
Molecular Weight 544.60 g/mol
Activity Nucleoside Analog
Source Synthetic
Shipping Ambient temperature (styrofoam + ice gels)
Options selector
Catalog no. Size
B-05-10MG 10 mg
B-05-25MG 25 mg
B-05-50MG 50 mg
B-05-100MG 100 mg
B-05-250MG 250 mg
B-05-500MG 500 mg
B-05-1G 1 g
Available Options

Available Sizes:

  • 10 mg
  • 25 mg
  • 50 mg
  • 100 mg
  • 250 mg
  • 500 mg
  • 1 g

Shipping: Ambient temperature (styrofoam + ice gels) — shipped on ice packs at ambient temperature (styrofoam + ice gels). Store at −20 °C upon receipt.

Field Specification
Mfr No B-05
Activity
  • Nucleoside Analog
Alternative Names 5′-O-(4,4′-Dimethoxytrityl)thymidine, 5′-O-[bis(4-methoxyphenyl)phenylmethyl]thymidine, 5′-O-[α,α-bis(p-methoxyphenyl)benzyl]thymidine
Coenzyme A Class Nucleoside
Form Crystalline powder
Molecular Weight 544.60 g/mol
Product Type
  • Biochemicals
  • Small Molecules
Purity ≥ 98.0%
Shipping Ambient temperature (styrofoam + ice gels)
SMILES O=C1NC(C(C)=CN1[C@@H]2O[C@H](COC(C3=CC=C(OC)C=C3)(C4=CC=CC=C4)C5=CC=C(OC)C=C5)[C@@H](O)C2)=O
Storage 2-8°C

Overview

5'-O-DMT-Thymidine is a biochemical supplied by Coenza for use in enzymology and metabolic research. Available as Crystalline powder, purity ≥ 98.0%, suitable for in vitro assays and pathway studies.

Also known as: 5′-O-(4,4′-Dimethoxytrityl)thymidine, 5′-O-[bis(4-methoxyphenyl)phenylmethyl]thymidine, 5′-O-[α,α-bis(p-methoxyphenyl)benzyl]thymidine.

Key Elements and Design Rationale

  • Formula / MW / Purity: C31H32N2O7; 544.60 g/mol; ≥ 98.0%.
  • Form: Crystalline powder.
  • Synonyms: 5′-O-(4,4′-Dimethoxytrityl)thymidine, 5′-O-[bis(4-methoxyphenyl)phenylmethyl]thymidine, 5′-O-[α,α-bis(p-methoxyphenyl)benzyl]thymidine.

Biological Background

5'-O-DMT-Thymidine is a synthetic nucleoside analog used in oligonucleotide chemistry and nucleic acid research.

Research Relevance and Current Trends

  • Rising demand for modified nucleosides in mRNA and antisense oligonucleotide therapeutics development.
  • 5'-Halogenated derivatives used as mechanism-based probes for structural and enzymological studies.
  • Phosphoramidite nucleosides central to automated solid-phase DNA/RNA synthesis.

Common Research Applications

  • Building blocks for chemical oligonucleotide synthesis (solid-phase, automated).
  • Substrate/inhibitor characterization for nucleoside kinases, polymerases, and nucleotidases.
  • Click-chemistry probes and bioconjugation via azide or iodo functional handles.

Notes for Experimental Interpretation

  • Azide-bearing analogs require appropriate safety precautions.
  • DMT-protected derivatives are moisture-sensitive; handle under dry conditions.
  • Verify protecting group compatibility with your deprotection protocol before use.
What is 5'-O-DMT-Thymidine and what is it used for?
5'-O-DMT-Thymidine is a synthetic nucleoside analog (MW 544.60 g/mol, C31H32N2O7) supplied as Crystalline powder, purity ≥ 98.0%. It serves as a building block in oligonucleotide synthesis and as a probe in enzyme mechanism studies involving nucleoside-modifying enzymes.
What purity and analytical data are provided?
Purity is ≥ 98.0%, verified by HPLC and/or NMR. A Certificate of Analysis (COA) is available for download on the product page. Contact BioHippo or Coenza if additional analytical data (e.g., MS, chiral purity) is required for your application.
How should 5'-O-DMT-Thymidine be stored and handled?
Store at 2–8 °C (refer to the COA for the exact recommended temperature). Stability: ≥ 2 years. Handle iodo- or azido-substituted variants under reduced light and with appropriate chemical safety measures. Minimize freeze-thaw cycles after first opening.
Is this compound compatible with automated oligonucleotide synthesis?
DMT-protected and phosphoramidite variants from Coenza are designed for solid-phase automated synthesis. Verify that the protecting group strategy matches your synthesizer chemistry and deprotection conditions. TIPS-protected compounds are typically used in solution-phase selective deprotection steps.
Can this compound be used in enzyme assays or bioconjugation?
Yes. Azido and iodo nucleoside analogs are compatible with click-chemistry or halogen-displacement conjugation reactions. As enzyme substrates, they can be used with kinases, nucleotidases, polymerases, or phosphorylases where the modification is tolerated — always confirm substrate compatibility with the target enzyme before designing assays.

Need this compound in a format that drops straight into your assay? We can tailor formulation, chemistry, and documentation so your results stay consistent across runs and re-orders.

  • Format options: solid or pre-dissolved solution (choose solvent), target concentration, aliquots, light/moisture-protected packaging
  • Chemistry options: free base/acid vs salt forms, hydrate/solvate preference, stereoisomer control (single enantiomer or racemate), close analogs
  • Add-on labels & handles: D/¹³C/¹⁵N isotopes (LC-MS/internal standards), azide/alkyne or other functional handles for conjugation
  • QC & documentation: standard COA or enhanced analytical pack (HPLC/LC-MS/NMR), chiral purity, residual solvents, water content (KF), method-specific specs
  • Scale & continuity: mg to gram scale, bulk pricing, lot reservation, repeat-order continuity

To quote quickly, tell us: compound name + CAS/structure (SMILES or mol file), intended assay context, solvent preference, salt/stereochemistry requirements, purity/QC level, and the amount (mg–g).

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Send the CAS or structure and your specs. We can help source it, suggest close equivalents, or discuss custom synthesis with the right QC documentation (RUO).

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