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DNA relaxation is the change of supercoiled circular DNA into relaxed DNA, carried out by DNA topoisomerases such as bacterial topoisomerase I.
Formats and Pack Sizes
DRA100K supplies the assay reagents without enzyme, while DRA100KE adds 42 µl of 100 x E. coli topoisomerase I. The H19 dye is also packed differently (8 µl of 4500 x in DRA100K vs 20 µl of 1500 x in DRA100KE).
| Kit (enzyme not included), 100 assays (DRA100K) | 100 assays |
|---|---|
| Kit Plus (E. coli Topo I included), 100 assays (DRA100KE) | 100 assays (96-well) or 200 assays (384-well) |
Kit Components
| Component | Kit (enzyme not included), 100 assays (DRA100K) | Kit Plus (E. coli Topo I included), 100 assays (DRA100KE) |
|---|---|---|
| 10 x Buffer T1 | 480 µl | 480 µl |
| 10 x Supercoiled plasmid DNA | 405 µl | 405 µl |
| Dye H19 (also sold separately as H19 Dye for DNA Relaxation and Supercoiling Assays, BHT16300181) | 8 µl (4500 x) | 20 µl (1500 x) |
| 10 x H19 dilution buffer | 3000 µl | 3000 µl |
| 100 x E. coli topoisomerase I | Not included | 42 µl |
Final bacterial topo I reaction: 16 mM Tris-HCl pH 8, 6 mM MgCl2, 25 µg/ml supercoiled plasmid DNA and 40 nM topoisomerase I. Free magnesium is needed for H19 detection, so high EDTA should be avoided in the reaction and detection solutions.
Assay Principle
The kit uses the fluorescence dye H19, which in the presence of magnesium gives a much weaker signal with relaxed DNA than with supercoiled DNA. As topoisomerase I relaxes the supercoiled plasmid, fluorescence at 535 nm (excitation 485 nm) decreases.
Specifications
| Assay Target | Topo I DNA relaxation activity |
|---|---|
| Target Type | Topoisomerase |
| Assay Type | Enzyme Activity Assay |
| Detection Method | Fluorescence |
| Detection Wavelength | Ex 485 nm / Em 535 nm |
| Plate Format | 96-well or 384-well plate |
| Instrument Required | Fluorescence microplate reader |
| Assay Time | About 65 min (60 min reaction + 5 min detection) |
| Sizes | Kit: 100 assays; Kit Plus: 100 assays (96-well) or 200 assays (384-well) |
| Storage | Please contact us to confirm storage conditions. |
| Shipping | Shipped frozen. |
Protocol
The manufacturer's protocol describes the procedure and reaction volumes.
- E. coli DNA Topoisomerase I Assay (PDF, see Documents): Covers catalog # DRA100KE.
Safety & Handling
Can’t find the exact format you need? We can help you source or customize this topo I DNA relaxation activity assay — including larger pack sizes, bulk reagents, bulk enzyme, or a protocol adapted to your samples. Click Talk to a Scientist, email support@biohippo.com, or explore our Research Services. Our team will be in touch shortly.